CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1582 rna-evm.model.Chr15.1582 Chr15 45559111 45608576 PREDICTED: Histone deacetylase 6 nan K11407
gene-evm.TU.Chr15.1583 rna-evm.model.Chr15.1583 Chr15 45611260 45619016 PREDICTED: Histone deacetylase 6 GO:0008270 K11407
gene-evm.TU.Chr15.1584 rna-evm.model.Chr15.1584 Chr15 45627730 45647965 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial nan K11351
gene-evm.TU.Chr15.1585 rna-evm.model.Chr15.1585 Chr15 45658088 45736809 PREDICTED: Plexin-A1 GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr15.1587 rna-evm.model.Chr15.1587 Chr15 45780640 45784643 PREDICTED: Plexin-B1 GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr15.1588 rna-evm.model.Chr15.1588 Chr15 45786892 45798708 PREDICTED: Plexin-A1 GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr15.1589 rna-evm.model.Chr15.1589 Chr15 45801527 45890540 PREDICTED: Plexin-B3 GO:0005515;GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr15.159 rna-evm.model.Chr15.159 Chr15 3775598 3784772 PREDICTED: Mediator of RNA polymerase II transcription subunit 20 GO:0003712;GO:0006357;GO:0016592 K13528
gene-evm.TU.Chr15.1590 rna-evm.model.Chr15.1590 Chr15 45899162 45900307 PREDICTED: Orexin receptor type 1 GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr15.1591 rna-evm.model.Chr15.1591 Chr15 45972518 45977123 PREDICTED: Plexin-B2 nan K06820

For more detailed data, you can explore the Download section to access the full dataset.