CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.163 rna-evm.model.Chr15.163 Chr15 3805140 3818195 PREDICTED: Histidine ammonia-lyase nan K01745
gene-evm.TU.Chr15.1630 rna-evm.model.Chr15.1630 Chr15 47471574 47484361 PREDICTED: Dynein heavy chain 3, axonemal nan K10408
gene-evm.TU.Chr15.1631 rna-evm.model.Chr15.1631 Chr15 47521050 47567723 PREDICTED: Aminopeptidase N GO:0006508;GO:0008237;GO:0008270 K11140
gene-evm.TU.Chr15.1632 rna-evm.model.Chr15.1632 Chr15 47605133 47608887 PREDICTED: Ficolin-1 nan K10104
gene-evm.TU.Chr15.1636 rna-evm.model.Chr15.1636 Chr15 47975477 47996751 PREDICTED: Metabotropic glutamate receptor GO:0004930;GO:0007186;GO:0016020 K04606
gene-evm.TU.Chr15.164 rna-evm.model.Chr15.164 Chr15 3819647 3833812 PREDICTED: Urocanate hydratase GO:0016153 K01712
gene-evm.TU.Chr15.1642 rna-evm.model.Chr15.1642 Chr15 48146087 48146918 uncharacterized protein nan K16817
gene-evm.TU.Chr15.1643 rna-evm.model.Chr15.1643 Chr15 48188365 48189773 PREDICTED: solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29 nan K10395
gene-evm.TU.Chr15.1644 rna-evm.model.Chr15.1644 Chr15 48191524 48194395 PREDICTED: importin-4 nan K11703
gene-evm.TU.Chr15.1645 rna-evm.model.Chr15.1645 Chr15 48272534 48272714 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.