CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1536 rna-evm.model.Chr15.1536 Chr15 44520950 44592169 PREDICTED: Galaxin nan K06238
gene-evm.TU.Chr15.1537 rna-evm.model.Chr15.1537 Chr15 44619381 44673991 PREDICTED: Cortactin-binding protein 2 GO:0005515 K19483
gene-evm.TU.Chr15.1538 rna-evm.model.Chr15.1538 Chr15 44691553 44705168 PREDICTED: Hepatic lectin nan K06560
gene-evm.TU.Chr15.1539 rna-evm.model.Chr15.1539 Chr15 44709883 44713467 PREDICTED: mannose receptor, C type nan K06561
gene-evm.TU.Chr15.1541 rna-evm.model.Chr15.1541 Chr15 44775032 44779559 PREDICTED: Uncharacterized methyltransferase YodH GO:0008168 K17462
gene-evm.TU.Chr15.1542 rna-evm.model.Chr15.1542 Chr15 44781927 44789467 PREDICTED: Hydroxyproline dehydrogenase GO:0004657;GO:0006562 K11394
gene-evm.TU.Chr15.1543 rna-evm.model.Chr15.1543 Chr15 44822491 44822934 uncharacterized protein nan nan
gene-evm.TU.Chr15.1544 rna-evm.model.Chr15.1544 Chr15 44838877 44864398 PREDICTED: Rho guanine nucleotide exchange factor 3 GO:0005085;GO:0035023 K20683
gene-evm.TU.Chr15.1545 rna-evm.model.Chr15.1545 Chr15 44878091 44899439 PREDICTED: Mitochondrial substrate carrier family protein ucpB GO:0006839;GO:0031966 K15103
gene-evm.TU.Chr15.1546 rna-evm.model.Chr15.1546 Chr15 44903022 44905028 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 3 GO:0005509;GO:0007156;GO:0016020 K04600

For more detailed data, you can explore the Download section to access the full dataset.