CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1526 rna-evm.model.Chr15.1526 Chr15 44269417 44275477 uncharacterized protein nan nan
gene-evm.TU.Chr15.1527 rna-evm.model.Chr15.1527 Chr15 44279578 44287243 PREDICTED: Sulfoquinovosidase GO:0004553;GO:0005975 K15922
gene-evm.TU.Chr15.1528 rna-evm.model.Chr15.1528 Chr15 44295817 44309933 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr15.1529 rna-evm.model.Chr15.1529 Chr15 44317938 44318534 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr15.153 rna-evm.model.Chr15.153 Chr15 3571755 3582073 PREDICTED: Eukaryotic translation initiation factor 4E type 3 GO:0003723;GO:0003743;GO:0006413 K03259
gene-evm.TU.Chr15.1530 rna-evm.model.Chr15.1530 Chr15 44375347 44384888 uncharacterized protein nan K07771
gene-evm.TU.Chr15.1532 rna-evm.model.Chr15.1532 Chr15 44445926 44446264 uncharacterized protein nan nan
gene-evm.TU.Chr15.1533 rna-evm.model.Chr15.1533 Chr15 44485141 44486286 PREDICTED: ATP-binding protein involved in chromosome partitioning nan K10051
gene-evm.TU.Chr15.1534 rna-evm.model.Chr15.1534 Chr15 44497986 44509254 PREDICTED: Wiskott-Aldrich syndrome protein GO:0003779;GO:0007015;GO:2000601 K05747
gene-evm.TU.Chr15.1535 rna-evm.model.Chr15.1535 Chr15 44509734 44517594 PREDICTED: Methyltransferase-like protein 24 nan K16381

For more detailed data, you can explore the Download section to access the full dataset.