CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1547 rna-evm.model.Chr15.1547 Chr15 44912243 44967706 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 1 GO:0004888;GO:0004930;GO:0005509;GO:0007156;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04600
gene-evm.TU.Chr15.1548 rna-evm.model.Chr15.1548 Chr15 44972229 45001790 PREDICTED: Mitochondrial-processing peptidase subunit beta nan K17732
gene-evm.TU.Chr15.1549 rna-evm.model.Chr15.1549.2 Chr15 45006540 45078839 PREDICTED: Dynein heavy chain 12, axonemal GO:0003777;GO:0005524;GO:0007018;GO:0030286 K10408
gene-evm.TU.Chr15.155 rna-evm.model.Chr15.155 Chr15 3609309 3609632 PREDICTED: importin-4 nan nan
gene-evm.TU.Chr15.1550 rna-evm.model.Chr15.1550 Chr15 45078954 45089537 PREDICTED: IQ and ubiquitin-like domain-containing protein GO:0005515 K24838
gene-evm.TU.Chr15.1551 rna-evm.model.Chr15.1551 Chr15 45094024 45105356 PREDICTED: Guanylyl cyclase GC-E GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12324
gene-evm.TU.Chr15.1552 rna-evm.model.Chr15.1552 Chr15 45107287 45121402 PREDICTED: Cadherin-related tumor suppressor GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr15.1553 rna-evm.model.Chr15.1553 Chr15 45148138 45156188 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 48 GO:0016579;GO:0004843 K11858
gene-evm.TU.Chr15.1554 rna-evm.model.Chr15.1554 Chr15 45156509 45156856 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 48 GO:0005515 K11858
gene-evm.TU.Chr15.1555 rna-evm.model.Chr15.1555 Chr15 45176010 45187663 PREDICTED: Krueppel-like factor 15 GO:0003676 K09210

For more detailed data, you can explore the Download section to access the full dataset.