CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1 rna-evm.model.Chr1.1 Chr1 19485 34031 uncharacterized protein nan K21114
gene-evm.TU.Chr1.10 rna-evm.model.Chr1.10 Chr1 475731 476363 uncharacterized protein nan nan
gene-evm.TU.Chr1.100 rna-evm.model.Chr1.100 Chr1 3296689 3303129 PREDICTED: Protein zwilch homolog GO:0007093;GO:1990423 K11579
gene-evm.TU.Chr1.1000 rna-evm.model.Chr1.1000 Chr1 30456454 30459309 PREDICTED: titin homolog nan K11124
gene-evm.TU.Chr1.1005 rna-evm.model.Chr1.1005 Chr1 30590682 30599651 PREDICTED: Mastermind-like protein 1 GO:0003713;GO:0007219;GO:0016607;GO:0045944 K06061
gene-evm.TU.Chr1.1006 rna-evm.model.Chr1.1006 Chr1 30811762 30812941 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr1.1007 rna-evm.model.Chr1.1007 Chr1 30832241 30833637 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr1.1008 rna-evm.model.Chr1.1008 Chr1 30839409 30841012 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr1.1009 rna-evm.model.Chr1.1009 Chr1 30842174 30844540 PREDICTED: Cerebellin-3 nan K24236
gene-evm.TU.Chr1.101 rna-evm.model.Chr1.101.2 Chr1 3311995 3333580 PREDICTED: Brain tumor protein GO:0005515;GO:0008270 K11997

For more detailed data, you can explore the Download section to access the full dataset.