CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1602 rna-evm.model.Chr15.1602 Chr15 46279546 46283833 PREDICTED: WD repeat-containing protein WRAP73 GO:0005515 K25164
gene-evm.TU.Chr15.1603 rna-evm.model.Chr15.1603 Chr15 46314123 46327287 PREDICTED: Tafazzin GO:0006644;GO:0016746 K13511
gene-evm.TU.Chr15.1604 rna-evm.model.Chr15.1604 Chr15 46331385 46334422 PREDICTED: Tubulin alpha-1A chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr15.1605 rna-evm.model.Chr15.1605 Chr15 46345104 46348495 PREDICTED: Probable protein BRICK1-B GO:0007015;GO:0031209;GO:0044877 K05752
gene-evm.TU.Chr15.1606 rna-evm.model.Chr15.1606 Chr15 46350798 46351450 PREDICTED: Protein RD3 nan K25404
gene-evm.TU.Chr15.1607 rna-evm.model.Chr15.1607 Chr15 46365224 46389722 PREDICTED: Synaptotagmin-7 GO:0016020 K19902
gene-evm.TU.Chr15.1609 rna-evm.model.Chr15.1609.1 Chr15 46452943 46483194 PREDICTED: GATA-binding factor 3 GO:0003700;GO:0006355;GO:0008270;GO:0043565 K17894
gene-evm.TU.Chr15.161 rna-evm.model.Chr15.161 Chr15 3788186 3792971 PREDICTED: Small nuclear ribonucleoprotein F GO:0000398;GO:0005732 K11098
gene-evm.TU.Chr15.1610 rna-evm.model.Chr15.1610 Chr15 46560575 46592124 PREDICTED: CD82 antigen GO:0016020 K17352
gene-evm.TU.Chr15.1612 rna-evm.model.Chr15.1612 Chr15 46704143 46705319 uncharacterized protein nan K24382

For more detailed data, you can explore the Download section to access the full dataset.