CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1593 rna-evm.model.Chr15.1593 Chr15 46012532 46017388 PREDICTED: Titin GO:0005515 K12567
gene-evm.TU.Chr15.1594 rna-evm.model.Chr15.1594 Chr15 46020783 46022605 uncharacterized protein nan nan
gene-evm.TU.Chr15.1595 rna-evm.model.Chr15.1595 Chr15 46039712 46043297 PREDICTED: CUB and sushi domain-containing protein GO:0005576;GO:0006030;GO:0008061 nan
gene-evm.TU.Chr15.1596 rna-evm.model.Chr15.1596.1 Chr15 46093804 46118413 PREDICTED: Nuclear protein MDM1 GO:0008017;GO:0046600 K17886
gene-evm.TU.Chr15.1597 rna-evm.model.Chr15.1597 Chr15 46132696 46192327 PREDICTED: Collagen alpha-5(VI) chain GO:0005515 K06829
gene-evm.TU.Chr15.1598 rna-evm.model.Chr15.1598 Chr15 46196993 46214172 PREDICTED: Histone deacetylase 11 nan K11418
gene-evm.TU.Chr15.16 rna-evm.model.Chr15.16 Chr15 439285 460802 PREDICTED: NXPE family member 2 nan K12021
gene-evm.TU.Chr15.160 rna-evm.model.Chr15.160 Chr15 3785175 3786207 PREDICTED: Transposable element Tcb1 transposase nan K07494
gene-evm.TU.Chr15.1600 rna-evm.model.Chr15.1600 Chr15 46268596 46270047 uncharacterized protein nan K06707
gene-evm.TU.Chr15.1601 rna-evm.model.Chr15.1601 Chr15 46274389 46277216 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 13 nan K00710

For more detailed data, you can explore the Download section to access the full dataset.