CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1556 rna-evm.model.Chr15.1556 Chr15 45192818 45221210 PREDICTED: Heat shock 70 kDa protein 14 nan K03283
gene-evm.TU.Chr15.1557 rna-evm.model.Chr15.1557 Chr15 45222495 45223175 PREDICTED: relaxin family peptide receptor 1 nan nan
gene-evm.TU.Chr15.1558 rna-evm.model.Chr15.1558 Chr15 45221312 45226902 PREDICTED: Mesencephalic astrocyte-derived neurotrophic factor homolog nan K22556
gene-evm.TU.Chr15.1559 rna-evm.model.Chr15.1559 Chr15 45228272 45234215 PREDICTED: Toll-like receptor 4 nan K10160
gene-evm.TU.Chr15.156 rna-evm.model.Chr15.156 Chr15 3606622 3622124 PREDICTED: Ankyrin repeat and SOCS box protein 9 GO:0005515 K10327
gene-evm.TU.Chr15.1562 rna-evm.model.Chr15.1562 Chr15 45267139 45271056 PREDICTED: Toll-like receptor 4 GO:0005515;GO:0007165 K10160
gene-evm.TU.Chr15.1563 rna-evm.model.Chr15.1563 Chr15 45275391 45278579 PREDICTED: Toll-like receptor 4 GO:0005515;GO:0007165 K10160
gene-evm.TU.Chr15.1566 rna-evm.model.Chr15.1566 Chr15 45299512 45311171 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr15.1567 rna-evm.model.Chr15.1567 Chr15 45312175 45321999 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12646
gene-evm.TU.Chr15.1568 rna-evm.model.Chr15.1568 Chr15 45323776 45334885 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038

For more detailed data, you can explore the Download section to access the full dataset.