CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.157 rna-evm.model.Chr15.157 Chr15 3679084 3684945 PREDICTED: Putative ariadne-like RING finger protein R811 GO:0005515 K05791
gene-evm.TU.Chr15.1572 rna-evm.model.Chr15.1572 Chr15 45396828 45400026 PREDICTED: E3 ubiquitin-protein ligase TRIM33 nan K12026
gene-evm.TU.Chr15.1573 rna-evm.model.Chr15.1573 Chr15 45406628 45424369 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr15.1574 rna-evm.model.Chr15.1574 Chr15 45425357 45432761 PREDICTED: Protein PELPK1 nan K02967
gene-evm.TU.Chr15.1577 rna-evm.model.Chr15.1577 Chr15 45516323 45521749 uncharacterized protein nan K12378
gene-evm.TU.Chr15.1578 rna-evm.model.Chr15.1578 Chr15 45521697 45524789 PREDICTED: Mitochondrial dynamics protein MID49 nan K23507
gene-evm.TU.Chr15.1579 rna-evm.model.Chr15.1579 Chr15 45526761 45530358 PREDICTED: J domain-containing protein DDB_G0295729 nan K25100
gene-evm.TU.Chr15.158 rna-evm.model.Chr15.158 Chr15 3687662 3734916 uncharacterized protein nan nan
gene-evm.TU.Chr15.1580 rna-evm.model.Chr15.1580 Chr15 45542130 45547097 PREDICTED: Reticulocyte-binding protein 2 homolog a nan K06786
gene-evm.TU.Chr15.1581 rna-evm.model.Chr15.1581 Chr15 45551887 45554613 uncharacterized protein nan K01787

For more detailed data, you can explore the Download section to access the full dataset.