CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1517 rna-evm.model.Chr15.1517 Chr15 44125318 44131273 uncharacterized protein nan nan
gene-evm.TU.Chr15.1518 rna-evm.model.Chr15.1518 Chr15 44134871 44158578 PREDICTED: Dynamin-1-like protein GO:0003924;GO:0005525 K17065
gene-evm.TU.Chr15.1519 rna-evm.model.Chr15.1519 Chr15 44174339 44179437 PREDICTED: Heme-binding protein 2 nan nan
gene-evm.TU.Chr15.152 rna-evm.model.Chr15.152 Chr15 3555646 3570244 PREDICTED: E3 ubiquitin-protein ligase rnf213-alpha GO:0004842;GO:0005524;GO:0016887 K22754
gene-evm.TU.Chr15.1520 rna-evm.model.Chr15.1520 Chr15 44179727 44182877 PREDICTED: Heme-binding protein 2 nan nan
gene-evm.TU.Chr15.1521 rna-evm.model.Chr15.1521 Chr15 44185904 44188112 PREDICTED: Ficolin-3 nan K10104
gene-evm.TU.Chr15.1522 rna-evm.model.Chr15.1522 Chr15 44203315 44205405 PREDICTED: Ficolin-3 nan K10104
gene-evm.TU.Chr15.1523 rna-evm.model.Chr15.1523 Chr15 44207981 44213105 PREDICTED: Heme-binding protein 2 nan nan
gene-evm.TU.Chr15.1524 rna-evm.model.Chr15.1524 Chr15 44223868 44226455 PREDICTED: Heme-binding protein 2 nan nan
gene-evm.TU.Chr15.1525 rna-evm.model.Chr15.1525 Chr15 44238135 44265179 PREDICTED: Dynamin-1-like protein GO:0000266;GO:0003924;GO:0005525;GO:0016559 K17065

For more detailed data, you can explore the Download section to access the full dataset.