CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1496 rna-evm.model.Chr15.1496 Chr15 43757611 43778405 PREDICTED: Actin nan K10355
gene-evm.TU.Chr15.1497 rna-evm.model.Chr15.1497 Chr15 43784176 43785234 uncharacterized protein nan K20441
gene-evm.TU.Chr15.1498 rna-evm.model.Chr15.1498 Chr15 43789032 43795146 PREDICTED: nucleoprotein TPR-like nan K09027
gene-evm.TU.Chr15.1499 rna-evm.model.Chr15.1499 Chr15 43803843 43807542 PREDICTED: Sarcoplasmic calcium-binding protein nan K15825
gene-evm.TU.Chr15.15 rna-evm.model.Chr15.15 Chr15 382204 389598 PREDICTED: xeroderma pigmentosum group C-complementing protein nan K10838
gene-evm.TU.Chr15.150 rna-evm.model.Chr15.150 Chr15 3351197 3356348 PREDICTED: Mediator of RNA polymerase II transcription subunit 20 GO:0003712;GO:0006357;GO:0016592 K13528
gene-evm.TU.Chr15.1500 rna-evm.model.Chr15.1500 Chr15 43815211 43837682 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K20283
gene-evm.TU.Chr15.1503 rna-evm.model.Chr15.1503 Chr15 43864629 43868739 uncharacterized protein nan nan
gene-evm.TU.Chr15.1504 rna-evm.model.Chr15.1504 Chr15 43869814 43873942 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr15.1506 rna-evm.model.Chr15.1506 Chr15 43899932 43904360 PREDICTED: Heat shock 70 kDa protein 12A nan K04043

For more detailed data, you can explore the Download section to access the full dataset.