CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1477 rna-evm.model.Chr15.1477 Chr15 43445173 43450534 uncharacterized protein nan K09027
gene-evm.TU.Chr15.1478 rna-evm.model.Chr15.1478 Chr15 43465688 43471012 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676;GO:0003677 K11496
gene-evm.TU.Chr15.1479 rna-evm.model.Chr15.1479 Chr15 43477748 43481970 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K10422
gene-evm.TU.Chr15.148 rna-evm.model.Chr15.148 Chr15 3314815 3328577 PREDICTED: Histidine ammonia-lyase nan K01745
gene-evm.TU.Chr15.1480 rna-evm.model.Chr15.1480 Chr15 43485270 43489474 PREDICTED: stress response protein nst1-like nan K10060
gene-evm.TU.Chr15.1481 rna-evm.model.Chr15.1481 Chr15 43498452 43503590 PREDICTED: cingulin-like nan K09419
gene-evm.TU.Chr15.1482 rna-evm.model.Chr15.1482 Chr15 43510506 43524942 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan K03631
gene-evm.TU.Chr15.1483 rna-evm.model.Chr15.1483 Chr15 43543546 43551271 PREDICTED: Protein unc-93 homolog A nan K26151
gene-evm.TU.Chr15.1484 rna-evm.model.Chr15.1484 Chr15 43567887 43571962 PREDICTED: myosin heavy chain, non-muscle-like nan nan
gene-evm.TU.Chr15.1485 rna-evm.model.Chr15.1485 Chr15 43582160 43588350 PREDICTED: Heat shock 70 kDa protein 12B nan K04043

For more detailed data, you can explore the Download section to access the full dataset.