CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1465 rna-evm.model.Chr15.1465 Chr15 43270398 43285283 PREDICTED: RNA-binding protein 5 GO:0003676 K13094
gene-evm.TU.Chr15.1466 rna-evm.model.Chr15.1466 Chr15 43291143 43293996 PREDICTED: S-crystallin SL11 GO:0005515 K04097
gene-evm.TU.Chr15.1467 rna-evm.model.Chr15.1467 Chr15 43296761 43299770 uncharacterized protein nan K13899
gene-evm.TU.Chr15.1469 rna-evm.model.Chr15.1469 Chr15 43315032 43338575 PREDICTED: Molybdate-anion transporter GO:0015098;GO:0015689;GO:0016020 K24175
gene-evm.TU.Chr15.147 rna-evm.model.Chr15.147 Chr15 3298435 3313474 PREDICTED: Urocanate hydratase GO:0016153 K01712
gene-evm.TU.Chr15.1470 rna-evm.model.Chr15.1470 Chr15 43341424 43356161 PREDICTED: Protein SSUH2 homolog nan K09504
gene-evm.TU.Chr15.1471 rna-evm.model.Chr15.1471 Chr15 43361621 43367961 PREDICTED: RNA exonuclease 4 nan K18327
gene-evm.TU.Chr15.1473 rna-evm.model.Chr15.1473 Chr15 43399202 43400839 PREDICTED: Glucose dehydrogenase [FAD, quinone] GO:0016614;GO:0050660;GO:0055114 K00115
gene-evm.TU.Chr15.1475 rna-evm.model.Chr15.1475 Chr15 43426477 43432302 PREDICTED: peptide-O-fucosyltransferase [EC:2.4.1.221] GO:0005509 K07494
gene-evm.TU.Chr15.1476 rna-evm.model.Chr15.1476 Chr15 43436083 43442311 uncharacterized protein nan K15712

For more detailed data, you can explore the Download section to access the full dataset.