CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1455 rna-evm.model.Chr15.1455 Chr15 42939900 42948809 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr15.1456 rna-evm.model.Chr15.1456 Chr15 42964291 42967968 PREDICTED: Dual specificity tyrosine-phosphorylation-regulated kinase 2 GO:0004672;GO:0005524;GO:0006468 K18669
gene-evm.TU.Chr15.1457 rna-evm.model.Chr15.1457 Chr15 43001773 43051386 PREDICTED: F-box/LRR-repeat protein 5 GO:0005515 K10271
gene-evm.TU.Chr15.1458 rna-evm.model.Chr15.1458 Chr15 43051480 43052034 PREDICTED: Protein ATP6V1FNB nan K25474
gene-evm.TU.Chr15.1459 rna-evm.model.Chr15.1459 Chr15 43058194 43059582 uncharacterized protein nan K03847
gene-evm.TU.Chr15.1460 rna-evm.model.Chr15.1460 Chr15 43084137 43131975 PREDICTED: trichohyalin nan K18626
gene-evm.TU.Chr15.1461 rna-evm.model.Chr15.1461 Chr15 43149903 43203113 PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6 GO:0005085;GO:0035023;GO:0046872 K05724
gene-evm.TU.Chr15.1462 rna-evm.model.Chr15.1462 Chr15 43208148 43227607 PREDICTED: Guanine nucleotide-binding protein-like 3 homolog GO:0005525 K14538
gene-evm.TU.Chr15.1463 rna-evm.model.Chr15.1463 Chr15 43228058 43235849 PREDICTED: Ragulator complex protein LAMTOR5 GO:0005737;GO:0019079;GO:0043066;GO:0043154;GO:0071986 K16344
gene-evm.TU.Chr15.1464 rna-evm.model.Chr15.1464 Chr15 43238251 43252634 PREDICTED: Coatomer subunit gamma-2 GO:0005198;GO:0006886;GO:0016192;GO:0030117;GO:0030126 K17267

For more detailed data, you can explore the Download section to access the full dataset.