CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2273 rna-evm.model.Chr1.2273 Chr1 71831157 71834040 PREDICTED: Protein unc-13 homolog C nan K26456
gene-evm.TU.Chr1.2275 rna-evm.model.Chr1.2275 Chr1 71879788 71886112 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2276 rna-evm.model.Chr1.2276 Chr1 71893951 71922955 PREDICTED: Glycine receptor subunit alpha-1 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.2278 rna-evm.model.Chr1.2278 Chr1 71925773 71938691 PREDICTED: Exostosin-like 3 GO:0006024;GO:0006486;GO:0015012;GO:0015020;GO:0016020;GO:0016757 K02370
gene-evm.TU.Chr1.2279 rna-evm.model.Chr1.2279 Chr1 71940915 71946130 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.228 rna-evm.model.Chr1.228 Chr1 6902612 6903232 uncharacterized protein nan K07523
gene-evm.TU.Chr1.2280 rna-evm.model.Chr1.2280 Chr1 71964147 71974133 PREDICTED: small integral membrane protein 20 GO:0016020;GO:0033617 nan
gene-evm.TU.Chr1.2281 rna-evm.model.Chr1.2281 Chr1 71976263 71982119 uncharacterized protein nan K03586
gene-evm.TU.Chr1.2284 rna-evm.model.Chr1.2284 Chr1 72002704 72003537 PREDICTED: CD109 antigen nan K16761
gene-evm.TU.Chr1.2285 rna-evm.model.Chr1.2285 Chr1 72012365 72013198 PREDICTED: CD109 antigen nan K07327

For more detailed data, you can explore the Download section to access the full dataset.