CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2261 rna-evm.model.Chr1.2261 Chr1 71443383 71444991 uncharacterized protein nan nan
gene-evm.TU.Chr1.2262 rna-evm.model.Chr1.2262 Chr1 71446924 71464360 PREDICTED: N-acetylglucosamine-6-phosphate deacetylase GO:0016787 K01443
gene-evm.TU.Chr1.2263 rna-evm.model.Chr1.2263 Chr1 71472896 71475539 PREDICTED: Vacuolar ATPase assembly integral membrane protein vma21 GO:0070072 K23952
gene-evm.TU.Chr1.2264 rna-evm.model.Chr1.2264 Chr1 71479779 71488094 PREDICTED: COMM domain-containing protein 5 nan K22561
gene-evm.TU.Chr1.2265 rna-evm.model.Chr1.2265 Chr1 71492844 71506706 PREDICTED: Methylmalonic aciduria type A homolog, mitochondrial GO:0003924;GO:0005525 K07588
gene-evm.TU.Chr1.2266 rna-evm.model.Chr1.2266 Chr1 71524605 71536670 PREDICTED: LON peptidase N-terminal domain and RING finger protein 1 GO:0005515 K07157
gene-evm.TU.Chr1.2269 rna-evm.model.Chr1.2269 Chr1 71676341 71701807 PREDICTED: Peptidyl-prolyl cis-trans isomerase D GO:0000413;GO:0003755;GO:0005515 K05864
gene-evm.TU.Chr1.227 rna-evm.model.Chr1.227 Chr1 6894780 6895544 uncharacterized protein nan K07523
gene-evm.TU.Chr1.2270 rna-evm.model.Chr1.2270 Chr1 71708021 71709632 PREDICTED: UDP-glucose 4-epimerase [EC:5.1.3.2] GO:0003824;GO:0050662 K01784
gene-evm.TU.Chr1.2271 rna-evm.model.Chr1.2271 Chr1 71710294 71715545 PREDICTED: NF-kappa-B inhibitor cactus GO:0005515 K02580

For more detailed data, you can explore the Download section to access the full dataset.