CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2187 rna-evm.model.Chr1.2187 Chr1 69913083 69914582 PREDICTED: Neuroligin-4, Y-linked nan K03927
gene-evm.TU.Chr1.2188 rna-evm.model.Chr1.2188 Chr1 69921098 69924260 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2189 rna-evm.model.Chr1.2189 Chr1 69952742 69957698 uncharacterized protein nan K02383
gene-evm.TU.Chr1.2192 rna-evm.model.Chr1.2192 Chr1 70055977 70056705 PREDICTED: NAD(P)(+)--arginine ADP-ribosyltransferase 1 GO:0106274;GO:0006471 K06716
gene-evm.TU.Chr1.2193 rna-evm.model.Chr1.2193 Chr1 70063058 70068118 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2194 rna-evm.model.Chr1.2194 Chr1 70103455 70105329 PREDICTED: NAD(P)(+)--arginine ADP-ribosyltransferase 2 GO:0106274;GO:0006471 K06716
gene-evm.TU.Chr1.2195 rna-evm.model.Chr1.2195 Chr1 70107684 70113309 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.2198 rna-evm.model.Chr1.2198 Chr1 70160500 70161931 uncharacterized protein nan nan
gene-evm.TU.Chr1.2199 rna-evm.model.Chr1.2199 Chr1 70162988 70165275 uncharacterized protein GO:0005515 K10455
gene-evm.TU.Chr1.22 rna-evm.model.Chr1.22 Chr1 763228 769252 PREDICTED: Heavy metal-binding protein HIP nan K24236

For more detailed data, you can explore the Download section to access the full dataset.