CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2286 rna-evm.model.Chr1.2286 Chr1 72021840 72128145 PREDICTED: IgGFc-binding protein nan nan
gene-evm.TU.Chr1.229 rna-evm.model.Chr1.229 Chr1 6905099 6906654 uncharacterized protein nan K06567
gene-evm.TU.Chr1.2292 rna-evm.model.Chr1.2292 Chr1 72153144 72154926 uncharacterized protein nan nan
gene-evm.TU.Chr1.2293 rna-evm.model.Chr1.2293 Chr1 72159960 72160472 uncharacterized protein nan nan
gene-evm.TU.Chr1.2294 rna-evm.model.Chr1.2294 Chr1 72162165 72162923 uncharacterized protein nan nan
gene-evm.TU.Chr1.2297 rna-evm.model.Chr1.2297 Chr1 72174177 72191933 PREDICTED: DNA-directed RNA polymerase I subunit RPA49 GO:0003677;GO:0003899;GO:0005634;GO:0006351 K03005
gene-evm.TU.Chr1.2298 rna-evm.model.Chr1.2298 Chr1 72195927 72202013 PREDICTED: Proline-rich transmembrane protein 1 GO:0016020 K23896
gene-evm.TU.Chr1.2299 rna-evm.model.Chr1.2299 Chr1 72203628 72208730 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519
gene-evm.TU.Chr1.230 rna-evm.model.Chr1.230 Chr1 6908057 6909127 uncharacterized protein nan K07523
gene-evm.TU.Chr1.2300 rna-evm.model.Chr1.2300 Chr1 72209095 72211870 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519

For more detailed data, you can explore the Download section to access the full dataset.