CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2312 rna-evm.model.Chr1.2312 Chr1 72583697 72585532 PREDICTED: Anhydro-N-acetylmuramic acid kinase GO:0005524;GO:0006040;GO:0009254;GO:0016773 K09001
gene-evm.TU.Chr1.2314 rna-evm.model.Chr1.2314 Chr1 72601682 72620921 PREDICTED: Probable protein phosphatase 2C T23F11.1 GO:0003824;GO:0004722;GO:0006470 K14803
gene-evm.TU.Chr1.2315 rna-evm.model.Chr1.2315 Chr1 72635544 72641940 PREDICTED: GH3 domain-containing protein nan K14487
gene-evm.TU.Chr1.2317 rna-evm.model.Chr1.2317 Chr1 72645219 72648113 PREDICTED: Arylsulfatase B GO:0008484 K01135
gene-evm.TU.Chr1.2318 rna-evm.model.Chr1.2318 Chr1 72672315 72690330 PREDICTED: ADP-ribosylation factor 1 GO:0005525 K07937
gene-evm.TU.Chr1.2323 rna-evm.model.Chr1.2323 Chr1 72776330 72785621 PREDICTED: Fucose-1-phosphate guanylyltransferase GO:0016772 K00976
gene-evm.TU.Chr1.2324 rna-evm.model.Chr1.2324 Chr1 72795432 72798618 PREDICTED: Beta-1,4-mannosyltransferase egh GO:0019187 K02359
gene-evm.TU.Chr1.2325 rna-evm.model.Chr1.2325 Chr1 72805319 72817808 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.2326 rna-evm.model.Chr1.2326 Chr1 72823092 72827208 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.2327 rna-evm.model.Chr1.2327.1 Chr1 72831858 72860995 PREDICTED: Heat shock 70 kDa protein 12A nan K04043

For more detailed data, you can explore the Download section to access the full dataset.