CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2301 rna-evm.model.Chr1.2301 Chr1 72216479 72218822 PREDICTED: Apolipoprotein D nan K03098
gene-evm.TU.Chr1.2302 rna-evm.model.Chr1.2302 Chr1 72220422 72241111 PREDICTED: FH2 domain-containing protein 1 GO:0003779;GO:0016043;GO:0031267;GO:0030036 K23958
gene-evm.TU.Chr1.2303 rna-evm.model.Chr1.2303 Chr1 72252366 72371403 PREDICTED: E3 ubiquitin-protein ligase MYCBP2 nan K10693
gene-evm.TU.Chr1.2304 rna-evm.model.Chr1.2304 Chr1 72375692 72377176 PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A nan K17834
gene-evm.TU.Chr1.2305 rna-evm.model.Chr1.2305 Chr1 72377183 72378382 PREDICTED: Alpha-latrotoxin-Lh1a (Fragment) GO:0005515 K02580
gene-evm.TU.Chr1.2306 rna-evm.model.Chr1.2306 Chr1 72383467 72387514 PREDICTED: Protein wech nan K12026
gene-evm.TU.Chr1.2307 rna-evm.model.Chr1.2307 Chr1 72400445 72437575 uncharacterized protein GO:0005576;GO:0006030;GO:0008061 K23489
gene-evm.TU.Chr1.2309 rna-evm.model.Chr1.2309 Chr1 72442074 72446896 PREDICTED: Transposon TX1 uncharacterized 149 kDa protein nan K01142
gene-evm.TU.Chr1.231 rna-evm.model.Chr1.231 Chr1 6912967 6913518 uncharacterized protein nan K07523
gene-evm.TU.Chr1.2311 rna-evm.model.Chr1.2311 Chr1 72459019 72459964 uncharacterized protein nan K10413

For more detailed data, you can explore the Download section to access the full dataset.