CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2328 rna-evm.model.Chr1.2328 Chr1 72869763 72871158 PREDICTED: Protein FAM181B nan K16687
gene-evm.TU.Chr1.2329 rna-evm.model.Chr1.2329 Chr1 72880226 72899499 PREDICTED: Folate receptor alpha nan K13649
gene-evm.TU.Chr1.2330 rna-evm.model.Chr1.2330 Chr1 72909321 72915250 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 nan K03946
gene-evm.TU.Chr1.2331 rna-evm.model.Chr1.2331 Chr1 72915724 72969363 PREDICTED: Serine/threonine-protein kinase Nek1 GO:0004672;GO:0005524;GO:0006468 K08857
gene-evm.TU.Chr1.2332 rna-evm.model.Chr1.2332 Chr1 72979235 72986793 PREDICTED: Protein flp nan K01467
gene-evm.TU.Chr1.2333 rna-evm.model.Chr1.2333 Chr1 72991275 73008447 uncharacterized protein nan K07218
gene-evm.TU.Chr1.2339 rna-evm.model.Chr1.2339 Chr1 73133275 73139019 PREDICTED: Heat shock 70 kDa protein 12B nan nan
gene-evm.TU.Chr1.234 rna-evm.model.Chr1.234 Chr1 6939953 6950736 uncharacterized protein GO:0005515;GO:0007165 K02861
gene-evm.TU.Chr1.2340 rna-evm.model.Chr1.2340 Chr1 73140503 73144455 PREDICTED: myosin heavy chain nan K14972
gene-evm.TU.Chr1.2342 rna-evm.model.Chr1.2342 Chr1 73163210 73263044 PREDICTED: myosin heavy chain nan K20282

For more detailed data, you can explore the Download section to access the full dataset.