CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2250 rna-evm.model.Chr1.2250 Chr1 71086885 71093334 PREDICTED: Arylacetamide deacetylase GO:0016787 K13616
gene-evm.TU.Chr1.2251 rna-evm.model.Chr1.2251 Chr1 71100769 71146160 PREDICTED: Receptor-type tyrosine-protein phosphatase mu GO:0004725;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr1.2252 rna-evm.model.Chr1.2252 Chr1 71150184 71164589 PREDICTED: E3 ubiquitin-protein ligase TRIM56 nan K12026
gene-evm.TU.Chr1.2253 rna-evm.model.Chr1.2253 Chr1 71179887 71277488 PREDICTED: Urea-proton symporter DUR3 GO:0016020;GO:0022857;GO:0055085 K20989
gene-evm.TU.Chr1.2254 rna-evm.model.Chr1.2254 Chr1 71289394 71316359 PREDICTED: Protein mono-ADP-ribosyltransferase PARP11 GO:0003950 K15261
gene-evm.TU.Chr1.2255 rna-evm.model.Chr1.2255 Chr1 71342640 71344584 PREDICTED: Protein mono-ADP-ribosyltransferase PARP11 GO:0003950 K15261
gene-evm.TU.Chr1.2256 rna-evm.model.Chr1.2256 Chr1 71347962 71368582 PREDICTED: Protein mono-ADP-ribosyltransferase PARP11 GO:0003950 K15261
gene-evm.TU.Chr1.2257 rna-evm.model.Chr1.2257 Chr1 71385979 71389663 PREDICTED: UDP-3-O-acylglucosamine N-acyltransferase nan K02536
gene-evm.TU.Chr1.2258 rna-evm.model.Chr1.2258 Chr1 71394015 71398216 uncharacterized protein nan nan
gene-evm.TU.Chr1.226 rna-evm.model.Chr1.226 Chr1 6870727 6889851 PREDICTED: Cathepsin L1 GO:0006508;GO:0008234 K01365

For more detailed data, you can explore the Download section to access the full dataset.