CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2213 rna-evm.model.Chr1.2213 Chr1 70361782 70363026 PREDICTED: G-protein coupled receptor 183 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K04284
gene-evm.TU.Chr1.2214 rna-evm.model.Chr1.2214 Chr1 70364945 70378282 PREDICTED: NLR family CARD domain-containing protein 3 nan K25409
gene-evm.TU.Chr1.2219 rna-evm.model.Chr1.2219 Chr1 70573220 70573759 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K09676
gene-evm.TU.Chr1.2228 rna-evm.model.Chr1.2228 Chr1 71035657 71036433 PREDICTED: Rho guanine nucleotide exchange factor 4/29 nan K12384
gene-evm.TU.Chr1.2230 rna-evm.model.Chr1.2230 Chr1 71037116 71037826 PREDICTED: Rho guanine nucleotide exchange factor 4/29 nan K09168
gene-evm.TU.Chr1.224 rna-evm.model.Chr1.224 Chr1 6831213 6845190 PREDICTED: Urea-proton symporter DUR3 GO:0016020;GO:0022857;GO:0055085 K20989
gene-evm.TU.Chr1.2247 rna-evm.model.Chr1.2247 Chr1 71068174 71069504 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr1.2248 rna-evm.model.Chr1.2248 Chr1 71072924 71077626 uncharacterized protein nan K11244
gene-evm.TU.Chr1.2249 rna-evm.model.Chr1.2249 Chr1 71079026 71086320 PREDICTED: coagulation factor V (labile factor) nan K05173
gene-evm.TU.Chr1.225 rna-evm.model.Chr1.225 Chr1 6847470 6865248 uncharacterized protein nan K13841

For more detailed data, you can explore the Download section to access the full dataset.