CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2200 rna-evm.model.Chr1.2200 Chr1 70167942 70170269 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K22499
gene-evm.TU.Chr1.2201 rna-evm.model.Chr1.2201 Chr1 70171607 70173169 uncharacterized protein GO:0005515 K10444
gene-evm.TU.Chr1.2202 rna-evm.model.Chr1.2202 Chr1 70180743 70182723 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10444
gene-evm.TU.Chr1.2205 rna-evm.model.Chr1.2205 Chr1 70206634 70209603 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10444
gene-evm.TU.Chr1.2206 rna-evm.model.Chr1.2206 Chr1 70215745 70218923 PREDICTED: Tripartite motif-containing protein 6 nan K11997
gene-evm.TU.Chr1.2207 rna-evm.model.Chr1.2207 Chr1 70223724 70244010 PREDICTED: myb-like protein X nan K25625
gene-evm.TU.Chr1.221 rna-evm.model.Chr1.221 Chr1 6800903 6802204 PREDICTED: Leukocyte elastase inhibitor GO:0005615 K13963
gene-evm.TU.Chr1.2210 rna-evm.model.Chr1.2210 Chr1 70309965 70320442 uncharacterized protein nan K06396
gene-evm.TU.Chr1.2211 rna-evm.model.Chr1.2211 Chr1 70321951 70326873 PREDICTED: MSCRAMM family adhesin clumping factor ClfB nan nan
gene-evm.TU.Chr1.2212 rna-evm.model.Chr1.2212 Chr1 70336213 70349623 uncharacterized protein GO:0005515 K20050

For more detailed data, you can explore the Download section to access the full dataset.