CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1414 rna-evm.model.Chr15.1414 Chr15 41765798 41865376 PREDICTED: Adenosylhomocysteinase-like 1 nan K01251
gene-evm.TU.Chr15.1415 rna-evm.model.Chr15.1415 Chr15 41865381 41871582 PREDICTED: S-adenosylhomocysteine hydrolase-like protein 1 nan K01251
gene-evm.TU.Chr15.1416 rna-evm.model.Chr15.1416 Chr15 41879662 41905950 PREDICTED: Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 GO:0005515 K18410
gene-evm.TU.Chr15.1417 rna-evm.model.Chr15.1417 Chr15 41906083 41911996 PREDICTED: Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 GO:0008137;GO:0009055;GO:0016020 K11352
gene-evm.TU.Chr15.1418 rna-evm.model.Chr15.1418 Chr15 41916264 41922084 PREDICTED: Centromere protein P GO:0000775;GO:0034080 K11508
gene-evm.TU.Chr15.1419 rna-evm.model.Chr15.1419 Chr15 41924134 41936706 PREDICTED: Prolyl 4-hydroxylase subunit alpha-1 GO:0004656;GO:0005506;GO:0005783;GO:0016491;GO:0016702;GO:0016705;GO:0031418;GO:0055114 K00472
gene-evm.TU.Chr15.1422 rna-evm.model.Chr15.1422 Chr15 42018452 42019778 uncharacterized protein nan nan
gene-evm.TU.Chr15.1426 rna-evm.model.Chr15.1426 Chr15 42090097 42096664 PREDICTED: Wiskott-Aldrich syndrome protein GO:0003779;GO:0007015;GO:2000601 K05747
gene-evm.TU.Chr15.1427 rna-evm.model.Chr15.1427.1 Chr15 42137676 42141271 PREDICTED: Raftlin nan nan
gene-evm.TU.Chr15.1428 rna-evm.model.Chr15.1428 Chr15 42154629 42156259 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.