CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1429 rna-evm.model.Chr15.1429 Chr15 42172550 42200730 uncharacterized protein nan K04573
gene-evm.TU.Chr15.143 rna-evm.model.Chr15.143 Chr15 3184718 3185350 uncharacterized protein nan nan
gene-evm.TU.Chr15.1431 rna-evm.model.Chr15.1431 Chr15 42264116 42264832 PREDICTED: Transposable element Tc1 transposase nan K17668
gene-evm.TU.Chr15.1434 rna-evm.model.Chr15.1434 Chr15 42312650 42318277 PREDICTED: myosin-11-like nan K22804
gene-evm.TU.Chr15.1435 rna-evm.model.Chr15.1435 Chr15 42358169 42375242 PREDICTED: Mucolipin-1 GO:0005261 K04994
gene-evm.TU.Chr15.1437 rna-evm.model.Chr15.1437 Chr15 42380914 42381882 PREDICTED: ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] nan K09897
gene-evm.TU.Chr15.1438 rna-evm.model.Chr15.1438 Chr15 42382448 42384879 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr15.1439 rna-evm.model.Chr15.1439 Chr15 42384971 42385732 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] nan K23209
gene-evm.TU.Chr15.144 rna-evm.model.Chr15.144 Chr15 3185427 3188560 PREDICTED: exosome complex component RRP45 GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr15.1440 rna-evm.model.Chr15.1440 Chr15 42391670 42393811 uncharacterized protein nan K21968

For more detailed data, you can explore the Download section to access the full dataset.