CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1401 rna-evm.model.Chr15.1401 Chr15 41093778 41094080 uncharacterized protein nan K15653
gene-evm.TU.Chr15.1402 rna-evm.model.Chr15.1402 Chr15 41094138 41094653 PREDICTED: L-2-aminoadipate reductase large subunit nan K00143
gene-evm.TU.Chr15.1403 rna-evm.model.Chr15.1403 Chr15 41104358 41208349 PREDICTED: Proto-oncogene tyrosine-protein kinase receptor Ret GO:0004672;GO:0004713;GO:0005515;GO:0005524;GO:0006468 K05126
gene-evm.TU.Chr15.1407 rna-evm.model.Chr15.1407 Chr15 41438090 41445104 PREDICTED: ATP-dependent RNA helicase DDX58 [EC:3.6.4.13] nan K12646
gene-evm.TU.Chr15.1408_evm.TU.Chr15.1409 rna-evm.model.Chr15.1408_evm.model.Chr15.1409 Chr15 41454944 41654721 PREDICTED: E3 ubiquitin-protein ligase PDZRN3 GO:0005515 K15682
gene-evm.TU.Chr15.141 rna-evm.model.Chr15.141 Chr15 3010969 3031603 PREDICTED: Copine-8 nan K24523
gene-evm.TU.Chr15.1410 rna-evm.model.Chr15.1410 Chr15 41661739 41665679 PREDICTED: Toll-like receptor 4 GO:0005515 K10160
gene-evm.TU.Chr15.1411 rna-evm.model.Chr15.1411 Chr15 41671288 41695932 PREDICTED: Toll-like receptor 4 GO:0005515 K05401
gene-evm.TU.Chr15.1412 rna-evm.model.Chr15.1412 Chr15 41695942 41708593 PREDICTED: Toll-like receptor 4 GO:0005515 K10160
gene-evm.TU.Chr15.1413 rna-evm.model.Chr15.1413 Chr15 41716535 41723205 PREDICTED: annexin A7/11 nan K22841

For more detailed data, you can explore the Download section to access the full dataset.