CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1389 rna-evm.model.Chr15.1389 Chr15 40500118 40621356 PREDICTED: Plexin-A2 GO:0005515;GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr15.139 rna-evm.model.Chr15.139 Chr15 2992569 2997866 uncharacterized protein nan K10212
gene-evm.TU.Chr15.1390 rna-evm.model.Chr15.1390 Chr15 40626907 40689878 PREDICTED: Plexin-A4 GO:0004672;GO:0005515;GO:0005524;GO:0006468;GO:0017154;GO:0071526 K05099
gene-evm.TU.Chr15.1391 rna-evm.model.Chr15.1391 Chr15 40697664 40705363 PREDICTED: Dipeptidyl peptidase 1 GO:0006508;GO:0008234 K01275
gene-evm.TU.Chr15.1392 rna-evm.model.Chr15.1392 Chr15 40748918 40788111 PREDICTED: Fibroblast growth factor receptor 2 GO:0004672;GO:0004713;GO:0005515;GO:0005524;GO:0006468 K05126
gene-evm.TU.Chr15.1395 rna-evm.model.Chr15.1395 Chr15 40990595 40991992 PREDICTED: dynein heavy chain, axonemal nan K14578
gene-evm.TU.Chr15.1398 rna-evm.model.Chr15.1398 Chr15 41040686 41052817 PREDICTED: Proto-oncogene tyrosine-protein kinase receptor Ret GO:0004672;GO:0004713;GO:0005524;GO:0006468 K05126
gene-evm.TU.Chr15.14 rna-evm.model.Chr15.14 Chr15 377415 378554 uncharacterized protein nan K13974
gene-evm.TU.Chr15.140 rna-evm.model.Chr15.140 Chr15 2988030 3005727 PREDICTED: Myogenesis-regulating glycosidase GO:0004553;GO:0005975 K24727
gene-evm.TU.Chr15.1400 rna-evm.model.Chr15.1400 Chr15 41092309 41093598 PREDICTED: Linear gramicidin synthase subunit C GO:0003824 K16124

For more detailed data, you can explore the Download section to access the full dataset.