CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1374 rna-evm.model.Chr15.1374 Chr15 40033459 40035143 PREDICTED: Protein toll GO:0005515;GO:0007165 K18809
gene-evm.TU.Chr15.1376 rna-evm.model.Chr15.1376 Chr15 40083097 40152414 PREDICTED: Stabilin-2 nan K19013
gene-evm.TU.Chr15.1377 rna-evm.model.Chr15.1377 Chr15 40169414 40169978 uncharacterized protein nan K19275
gene-evm.TU.Chr15.1378 rna-evm.model.Chr15.1378 Chr15 40185837 40229487 uncharacterized protein GO:0005509;GO:0005576;GO:0007160;GO:0030246 K10092
gene-evm.TU.Chr15.1379 rna-evm.model.Chr15.1379 Chr15 40277126 40288249 PREDICTED: male-specific lethal 1 GO:0005515;GO:0007165 K08332
gene-evm.TU.Chr15.1384_evm.TU.Chr15.1380 rna-evm.model.Chr15.1384_evm.model.Chr15.1380 Chr15 40292341 40346823 uncharacterized protein nan K10747
gene-evm.TU.Chr15.1385 rna-evm.model.Chr15.1385 Chr15 40361111 40383713 PREDICTED: Ras-related protein Rap-1b GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07836
gene-evm.TU.Chr15.1386 rna-evm.model.Chr15.1386 Chr15 40409719 40439276 PREDICTED: Gamma-secretase-activating protein nan nan
gene-evm.TU.Chr15.1387 rna-evm.model.Chr15.1387 Chr15 40445463 40454658 PREDICTED: Beta-hexosaminidase GO:0004553;GO:0004563;GO:0005975 K12373
gene-evm.TU.Chr15.1388 rna-evm.model.Chr15.1388 Chr15 40454707 40459539 PREDICTED: Kelch-like protein 3 GO:0005515 K10461

For more detailed data, you can explore the Download section to access the full dataset.