CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1361 rna-evm.model.Chr15.1361 Chr15 39685043 39708266 uncharacterized protein nan K06896
gene-evm.TU.Chr15.1362 rna-evm.model.Chr15.1362 Chr15 39708395 39716922 PREDICTED: Pre-mRNA-splicing factor 18 GO:0005681;GO:0008380 K12817
gene-evm.TU.Chr15.1365 rna-evm.model.Chr15.1365 Chr15 39781203 39781835 PREDICTED: F-box and leucine-rich repeat protein 2/20 nan K10313
gene-evm.TU.Chr15.1366 rna-evm.model.Chr15.1366 Chr15 39781957 39785327 PREDICTED: Serine-enriched protein GO:0005515 K10478
gene-evm.TU.Chr15.1369 rna-evm.model.Chr15.1369 Chr15 39794872 39796242 PREDICTED: Probable RNA-directed DNA polymerase from transposon X-element nan K00986
gene-evm.TU.Chr15.137 rna-evm.model.Chr15.137 Chr15 2871228 2872074 uncharacterized protein GO:0003676;GO:0008270 K12597
gene-evm.TU.Chr15.1370 rna-evm.model.Chr15.1370 Chr15 39806022 39866910 PREDICTED: Stabilin-2 nan K19013
gene-evm.TU.Chr15.1371 rna-evm.model.Chr15.1371 Chr15 39877216 39879067 PREDICTED: Ribosome-binding protein 1 nan K24296
gene-evm.TU.Chr15.1372 rna-evm.model.Chr15.1372 Chr15 39959041 39960210 uncharacterized protein nan K18189
gene-evm.TU.Chr15.1373 rna-evm.model.Chr15.1373 Chr15 39942857 40001082 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K26201

For more detailed data, you can explore the Download section to access the full dataset.