CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1337 rna-evm.model.Chr15.1337 Chr15 38864161 38868255 PREDICTED: Cartilage intermediate layer protein 2 nan K24436
gene-evm.TU.Chr15.1339 rna-evm.model.Chr15.1339 Chr15 38898997 38931568 PREDICTED: Potential E3 ubiquitin-protein ligase ariadne-2 GO:0004842;GO:0016567 K11969
gene-evm.TU.Chr15.1342 rna-evm.model.Chr15.1342 Chr15 39199580 39200518 uncharacterized protein nan K25696
gene-evm.TU.Chr15.1343 rna-evm.model.Chr15.1343 Chr15 39211106 39217261 PREDICTED: MIP-related peptides nan K13110
gene-evm.TU.Chr15.1345 rna-evm.model.Chr15.1345 Chr15 39377269 39399119 PREDICTED: Kelch domain-containing protein 10 GO:0005515 K25809
gene-evm.TU.Chr15.1346 rna-evm.model.Chr15.1346 Chr15 39401330 39403917 PREDICTED: Peptidyl-prolyl cis-trans isomerase-like 1 GO:0000413;GO:0003755 K12733
gene-evm.TU.Chr15.1347 rna-evm.model.Chr15.1347 Chr15 39408710 39420330 PREDICTED: Elongation factor Tu, mitochondrial GO:0003924;GO:0005525 K02358
gene-evm.TU.Chr15.1348 rna-evm.model.Chr15.1348 Chr15 39424512 39425393 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04231
gene-evm.TU.Chr15.1349 rna-evm.model.Chr15.1349 Chr15 39446181 39458516 uncharacterized protein nan K22019
gene-evm.TU.Chr15.135 rna-evm.model.Chr15.135 Chr15 2760509 2774881 PREDICTED: Protein mono-ADP-ribosyltransferase PARP14 nan K15261

For more detailed data, you can explore the Download section to access the full dataset.