CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1323 rna-evm.model.Chr15.1323 Chr15 38629118 38634973 PREDICTED: High mobility group protein B3 nan K10802
gene-evm.TU.Chr15.1324 rna-evm.model.Chr15.1324 Chr15 38646307 38662001 PREDICTED: Protein SET GO:0005634;GO:0006334 K11290
gene-evm.TU.Chr15.1325 rna-evm.model.Chr15.1325 Chr15 38670171 38687712 uncharacterized protein nan K04984
gene-evm.TU.Chr15.1326 rna-evm.model.Chr15.1326 Chr15 38693364 38702886 PREDICTED: protein rolling stone-like nan K24846
gene-evm.TU.Chr15.1328 rna-evm.model.Chr15.1328 Chr15 38731971 38732606 uncharacterized protein nan K20375
gene-evm.TU.Chr15.1330 rna-evm.model.Chr15.1330 Chr15 38738986 38740435 PREDICTED: Glucuronoxylan 4-O-methyltransferase 2 GO:0045492 K18801
gene-evm.TU.Chr15.1331 rna-evm.model.Chr15.1331 Chr15 38735202 38745914 PREDICTED: Glucuronoxylan 4-O-methyltransferase 2 GO:0045492 K18801
gene-evm.TU.Chr15.1333 rna-evm.model.Chr15.1333 Chr15 38758497 38789104 uncharacterized protein nan nan
gene-evm.TU.Chr15.1335 rna-evm.model.Chr15.1335 Chr15 38804934 38814567 uncharacterized protein nan K11244
gene-evm.TU.Chr15.1336 rna-evm.model.Chr15.1336 Chr15 38820858 38821502 PREDICTED: mucin-2 nan nan

For more detailed data, you can explore the Download section to access the full dataset.