CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1311 rna-evm.model.Chr15.1311 Chr15 38209213 38225969 PREDICTED: Hemicentin-1 nan K04596
gene-evm.TU.Chr15.1312 rna-evm.model.Chr15.1312 Chr15 38229716 38282197 PREDICTED: Complement C1q-like protein 4 nan K24236
gene-evm.TU.Chr15.1313 rna-evm.model.Chr15.1313 Chr15 38289310 38292818 uncharacterized protein nan K10077
gene-evm.TU.Chr15.1314 rna-evm.model.Chr15.1314 Chr15 38358486 38378479 PREDICTED: RecQ-mediated genome instability protein 1 GO:0000166 K10990
gene-evm.TU.Chr15.1315 rna-evm.model.Chr15.1315 Chr15 38407942 38418490 PREDICTED: Docking protein 3 GO:0008270 K20234
gene-evm.TU.Chr15.1318 rna-evm.model.Chr15.1318 Chr15 38442986 38443948 uncharacterized protein nan nan
gene-evm.TU.Chr15.1319 rna-evm.model.Chr15.1319 Chr15 38444044 38453290 PREDICTED: RNA-directed DNA polymerase from mobile element jockey GO:0006801;GO:0046872 K04565
gene-evm.TU.Chr15.132 rna-evm.model.Chr15.132 Chr15 2485855 2488028 uncharacterized protein nan K12397
gene-evm.TU.Chr15.1321 rna-evm.model.Chr15.1321 Chr15 38485380 38498012 PREDICTED: Dynactin subunit 6 GO:0005869 K10428
gene-evm.TU.Chr15.1322 rna-evm.model.Chr15.1322 Chr15 38512418 38623774 PREDICTED: Protein kinase C delta type GO:0004672;GO:0004674;GO:0005524;GO:0006468;GO:0035556 K06068

For more detailed data, you can explore the Download section to access the full dataset.