CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.13 rna-evm.model.Chr15.13 Chr15 346937 370734 PREDICTED: Polynucleotide 5'-hydroxyl-kinase NOL9 nan K06947
gene-evm.TU.Chr15.130 rna-evm.model.Chr15.130 Chr15 2481872 2482506 uncharacterized protein nan nan
gene-evm.TU.Chr15.1302 rna-evm.model.Chr15.1302 Chr15 37965195 37977353 PREDICTED: Alpha-tocopherol transfer protein-like nan K19625
gene-evm.TU.Chr15.1303 rna-evm.model.Chr15.1303 Chr15 38004951 38006177 PREDICTED: Probable G-protein coupled receptor 173 GO:0004930;GO:0007186;GO:0016020 K04300
gene-evm.TU.Chr15.1304 rna-evm.model.Chr15.1304 Chr15 38040055 38052367 PREDICTED: pherophorin-S nan K06274
gene-evm.TU.Chr15.1306 rna-evm.model.Chr15.1306 Chr15 38070557 38115648 PREDICTED: Protein Wnt-16 GO:0005102;GO:0005576;GO:0007275;GO:0016055 K01558
gene-evm.TU.Chr15.1307 rna-evm.model.Chr15.1307 Chr15 38151322 38154373 PREDICTED: EKC/KEOPS complex subunit TPRKB nan K15901
gene-evm.TU.Chr15.1308 rna-evm.model.Chr15.1308 Chr15 38155346 38170495 PREDICTED: U3 small nucleolar RNA-interacting protein 2 GO:0005515;GO:0006364;GO:0034511 K14793
gene-evm.TU.Chr15.1309 rna-evm.model.Chr15.1309 Chr15 38172809 38189754 PREDICTED: Protein-serine O-palmitoleoyltransferase porcupine nan K00181
gene-evm.TU.Chr15.1310 rna-evm.model.Chr15.1310 Chr15 38201042 38201833 PREDICTED: Complement C1q-like protein 4 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.