CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2175 rna-evm.model.Chr1.2175 Chr1 69686140 69703623 PREDICTED: NCK-interacting protein with SH3 domain GO:0005515 K20046
gene-evm.TU.Chr1.2176 rna-evm.model.Chr1.2176 Chr1 69715985 69727155 PREDICTED: Dolichol-phosphate mannosyltransferase subunit 3 GO:0006486 K09659
gene-evm.TU.Chr1.2177 rna-evm.model.Chr1.2177 Chr1 69728215 69743700 PREDICTED: GDP-fucose transporter 1 GO:0005457;GO:0005794;GO:0036085 K15279
gene-evm.TU.Chr1.2178 rna-evm.model.Chr1.2178 Chr1 69762815 69772722 PREDICTED: Ceramide phosphoethanolamine synthase nan K26283
gene-evm.TU.Chr1.218 rna-evm.model.Chr1.218 Chr1 6719638 6735540 PREDICTED: Phthiocerol synthesis polyketide synthase type I PpsD nan K12434
gene-evm.TU.Chr1.2180 rna-evm.model.Chr1.2180 Chr1 69777233 69786313 PREDICTED: Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 GO:0000049 K15437
gene-evm.TU.Chr1.2181_evm.TU.Chr1.2182 rna-evm.model.Chr1.2181_evm.model.Chr1.2182 Chr1 69786339 69809567 PREDICTED: Motile sperm domain-containing protein 2 nan K26544
gene-evm.TU.Chr1.2183 rna-evm.model.Chr1.2183 Chr1 69814081 69817278 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr1.2184 rna-evm.model.Chr1.2184.2 Chr1 69865541 69869840 PREDICTED: Brain-specific homeobox/POU domain protein 3 GO:0003677;GO:0003700;GO:0006355;GO:0007605;GO:0048839 K09366
gene-evm.TU.Chr1.2186 rna-evm.model.Chr1.2186 Chr1 69888105 69900551 uncharacterized protein nan K10882

For more detailed data, you can explore the Download section to access the full dataset.