CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1272 rna-evm.model.Chr15.1272 Chr15 37482429 37483109 uncharacterized protein nan nan
gene-evm.TU.Chr15.1273 rna-evm.model.Chr15.1273 Chr15 37496000 37499536 PREDICTED: Probable glutathione S-transferase 7 GO:0005515 K04097
gene-evm.TU.Chr15.1274 rna-evm.model.Chr15.1274 Chr15 37504892 37530959 uncharacterized protein nan K11244
gene-evm.TU.Chr15.1276 rna-evm.model.Chr15.1276 Chr15 37534503 37535479 uncharacterized protein nan K19843
gene-evm.TU.Chr15.128 rna-evm.model.Chr15.128 Chr15 2399234 2402166 PREDICTED: L-ascorbate oxidase GO:0005507 K00423
gene-evm.TU.Chr15.1280 rna-evm.model.Chr15.1280 Chr15 37547390 37564663 PREDICTED: Zinc finger protein 271 GO:0003676 K09228
gene-evm.TU.Chr15.1281 rna-evm.model.Chr15.1281 Chr15 37583668 37584539 PREDICTED: interferon-induced protein 44-like nan K10429
gene-evm.TU.Chr15.1286 rna-evm.model.Chr15.1286 Chr15 37690947 37691321 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K02604
gene-evm.TU.Chr15.129 rna-evm.model.Chr15.129 Chr15 2434725 2475628 PREDICTED: Protein mono-ADP-ribosyltransferase PARP14 GO:0003676;GO:0003950 K15261
gene-evm.TU.Chr15.1296 rna-evm.model.Chr15.1296 Chr15 37773228 37774439 PREDICTED: Putative uncharacterized transposon-derived protein F54H12.3 GO:0015074 K07497

For more detailed data, you can explore the Download section to access the full dataset.