CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.126 rna-evm.model.Chr15.126 Chr15 2359073 2363766 uncharacterized protein nan nan
gene-evm.TU.Chr15.1260 rna-evm.model.Chr15.1260 Chr15 37026294 37035478 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr15.1261 rna-evm.model.Chr15.1261 Chr15 37263925 37269056 uncharacterized protein nan K00726
gene-evm.TU.Chr15.1262 rna-evm.model.Chr15.1262 Chr15 37275227 37286293 PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1 [EC:5.2.1.8] nan K18919
gene-evm.TU.Chr15.1263 rna-evm.model.Chr15.1263 Chr15 37292280 37302496 PREDICTED: CCHC-type zinc finger protein CG3800 GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr15.1264 rna-evm.model.Chr15.1264 Chr15 37311941 37314544 PREDICTED: DNA-binding protein HEXBP GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr15.1265 rna-evm.model.Chr15.1265 Chr15 37341382 37360930 PREDICTED: Peroxisomal acyl-coenzyme A oxidase 1 GO:0003997;GO:0005777;GO:0006635;GO:0016627;GO:0055114 K10214
gene-evm.TU.Chr15.1266 rna-evm.model.Chr15.1266 Chr15 37371202 37383168 PREDICTED: Putative serine/threonine-protein kinase/receptor R831 GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr15.1269 rna-evm.model.Chr15.1269 Chr15 37395737 37399285 PREDICTED: Putative serine/threonine-protein kinase/receptor R831 GO:0004672;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr15.127 rna-evm.model.Chr15.127 Chr15 2363792 2379254 PREDICTED: NLR family CARD domain-containing protein 3 nan K12800

For more detailed data, you can explore the Download section to access the full dataset.