CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1244 rna-evm.model.Chr15.1244 Chr15 36107826 36139073 PREDICTED: Guanine nucleotide-binding protein G(i) subunit alpha GO:0003924;GO:0005525;GO:0007186;GO:0007188;GO:0019001;GO:0031683 K04630
gene-evm.TU.Chr15.1245 rna-evm.model.Chr15.1245.1 Chr15 36158130 36170668 PREDICTED: SRR1-like protein nan nan
gene-evm.TU.Chr15.1246 rna-evm.model.Chr15.1246 Chr15 36173896 36195649 PREDICTED: Leukotriene A-4 hydrolase GO:0006508;GO:0008237;GO:0008270 K01254
gene-evm.TU.Chr15.1248 rna-evm.model.Chr15.1248 Chr15 36220202 36275895 PREDICTED: Transient receptor potential cation channel subfamily V member 6 GO:0005216;GO:0005515;GO:0006811;GO:0016020;GO:0016020;GO:0055085 K04975
gene-evm.TU.Chr15.1249 rna-evm.model.Chr15.1249.1 Chr15 36297498 36306272 PREDICTED: Serine/threonine-protein kinase OSR1 GO:0004672;GO:0005524;GO:0006468 K21356
gene-evm.TU.Chr15.1250 rna-evm.model.Chr15.1250 Chr15 36309909 36343469 PREDICTED: Serine/threonine-protein kinase Nek4 GO:0004672;GO:0005524;GO:0006468 K08857
gene-evm.TU.Chr15.1252 rna-evm.model.Chr15.1252 Chr15 36358901 36363570 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr15.1254 rna-evm.model.Chr15.1254 Chr15 36558968 36587839 PREDICTED: Metabotropic glutamate receptor 8 GO:0004930;GO:0007186;GO:0016020 K04610
gene-evm.TU.Chr15.1255 rna-evm.model.Chr15.1255 Chr15 36655264 36662994 PREDICTED: histone-lysine N-methyltransferase SETD8 [EC:2.1.1.43] nan K11428
gene-evm.TU.Chr15.1258 rna-evm.model.Chr15.1258 Chr15 36837620 36840339 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.