CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.123 rna-evm.model.Chr15.123 Chr15 2321286 2326533 PREDICTED: MTRF1L release factor glutamine methyltransferase GO:0008168 K02493
gene-evm.TU.Chr15.1230 rna-evm.model.Chr15.1230 Chr15 35843802 35844748 PREDICTED: LINE-1 reverse transcriptase homolog nan K26653
gene-evm.TU.Chr15.1232 rna-evm.model.Chr15.1232 Chr15 35848179 35849219 uncharacterized protein GO:0003677;GO:0015074 K04763
gene-evm.TU.Chr15.1234 rna-evm.model.Chr15.1234 Chr15 35851705 35852310 uncharacterized protein nan K10804
gene-evm.TU.Chr15.1235 rna-evm.model.Chr15.1235 Chr15 35852865 35854226 uncharacterized protein nan K00983
gene-evm.TU.Chr15.1238 rna-evm.model.Chr15.1238 Chr15 35877954 35879770 PREDICTED: Complement C1q tumor necrosis factor-related protein 4 nan K24213
gene-evm.TU.Chr15.1240 rna-evm.model.Chr15.1240 Chr15 35931092 35940178 PREDICTED: Guanylate cyclase 32E GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12324
gene-evm.TU.Chr15.1241 rna-evm.model.Chr15.1241 Chr15 36008464 36054706 PREDICTED: Adhesion G-protein coupled receptor G6 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K08455
gene-evm.TU.Chr15.1242 rna-evm.model.Chr15.1242 Chr15 36068232 36073963 PREDICTED: Carboxypeptidase N subunit 2 GO:0005515 K13023
gene-evm.TU.Chr15.1243 rna-evm.model.Chr15.1243 Chr15 36075384 36078152 PREDICTED: Cartilage intermediate layer protein 2 nan K24436

For more detailed data, you can explore the Download section to access the full dataset.