CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1220 rna-evm.model.Chr15.1220 Chr15 35580786 35635056 PREDICTED: ATP-binding cassette sub-family A member 3 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05643
gene-evm.TU.Chr15.1221 rna-evm.model.Chr15.1221 Chr15 35655870 35695195 PREDICTED: SLIT-ROBO Rho GTPase-activating protein 1 GO:0005515;GO:0007165 K07526
gene-evm.TU.Chr15.1222 rna-evm.model.Chr15.1222 Chr15 35705900 35708643 PREDICTED: Transmembrane protein 243 nan K02277
gene-evm.TU.Chr15.1223 rna-evm.model.Chr15.1223 Chr15 35710929 35729721 PREDICTED: Cyclin-D-binding Myb-like transcription factor 1 nan K21625
gene-evm.TU.Chr15.1224 rna-evm.model.Chr15.1224 Chr15 35732755 35744740 PREDICTED: solute carrier family 5 (sodium-dependent multivitamin transporter), member 6 nan nan
gene-evm.TU.Chr15.1225 rna-evm.model.Chr15.1225 Chr15 35749619 35764248 PREDICTED: Pleckstrin GO:0035556 K19993
gene-evm.TU.Chr15.1226 rna-evm.model.Chr15.1226 Chr15 35818901 35819380 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr15.1227 rna-evm.model.Chr15.1227 Chr15 35820572 35820943 PREDICTED: contactin 2 nan K21037
gene-evm.TU.Chr15.1228 rna-evm.model.Chr15.1228 Chr15 35821693 35825686 uncharacterized protein nan nan
gene-evm.TU.Chr15.1229 rna-evm.model.Chr15.1229 Chr15 35835645 35836667 PREDICTED: Collagen alpha-2(VIII) chain nan K23284

For more detailed data, you can explore the Download section to access the full dataset.