CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.121 rna-evm.model.Chr15.121 Chr15 2295782 2296927 PREDICTED: Serine protease 23 GO:0004252;GO:0006508 K09627
gene-evm.TU.Chr15.1210 rna-evm.model.Chr15.1210 Chr15 35387078 35405070 PREDICTED: Polycomb protein Asx GO:0003677;GO:0006351;GO:0006355 K11471
gene-evm.TU.Chr15.1211 rna-evm.model.Chr15.1211 Chr15 35405231 35420078 PREDICTED: Coiled-coil domain-containing protein 178 nan K05636
gene-evm.TU.Chr15.1212 rna-evm.model.Chr15.1212 Chr15 35434661 35440187 PREDICTED: peptide-O-fucosyltransferase [EC:2.4.1.221] GO:0005509 K07494
gene-evm.TU.Chr15.1215 rna-evm.model.Chr15.1215 Chr15 35465609 35467427 PREDICTED: Glucose dehydrogenase [FAD, quinone] GO:0016614;GO:0050660;GO:0055114 K00108
gene-evm.TU.Chr15.1216 rna-evm.model.Chr15.1216 Chr15 35499915 35502951 PREDICTED: Serine racemase nan K01754
gene-evm.TU.Chr15.1217 rna-evm.model.Chr15.1217 Chr15 35532241 35551489 PREDICTED: Histone-lysine N-methyltransferase SUV39H2 GO:0005515;GO:0005634;GO:0008270;GO:0018024;GO:0034968 K11419
gene-evm.TU.Chr15.1218 rna-evm.model.Chr15.1218 Chr15 35555922 35566784 PREDICTED: V-type proton ATPase subunit S1 GO:1902600;GO:0033180;GO:0046933;GO:0046961 K03662
gene-evm.TU.Chr15.1219 rna-evm.model.Chr15.1219 Chr15 35571746 35580446 PREDICTED: Protein CLN8 GO:0016020 K12360
gene-evm.TU.Chr15.122 rna-evm.model.Chr15.122 Chr15 2310226 2319146 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 nan K09008

For more detailed data, you can explore the Download section to access the full dataset.