CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1199 rna-evm.model.Chr15.1199 Chr15 35127385 35131144 PREDICTED: Protein rolling stone nan nan
gene-evm.TU.Chr15.120 rna-evm.model.Chr15.120 Chr15 2288665 2295180 uncharacterized protein nan nan
gene-evm.TU.Chr15.1200 rna-evm.model.Chr15.1200 Chr15 35133813 35144477 PREDICTED: TBC1 domain family member 22A nan K20360
gene-evm.TU.Chr15.1201 rna-evm.model.Chr15.1201 Chr15 35158299 35160295 PREDICTED: 40S ribosomal protein S23 GO:0003735;GO:0005840;GO:0006412 K02973
gene-evm.TU.Chr15.1202 rna-evm.model.Chr15.1202 Chr15 35168678 35172442 PREDICTED: Protein rolling stone nan nan
gene-evm.TU.Chr15.1203 rna-evm.model.Chr15.1203 Chr15 35175110 35190847 PREDICTED: TBC1 domain family member 22A nan K20360
gene-evm.TU.Chr15.1205 rna-evm.model.Chr15.1205 Chr15 35223307 35228586 uncharacterized protein nan K22615
gene-evm.TU.Chr15.1206 rna-evm.model.Chr15.1206 Chr15 35256558 35268945 PREDICTED: NLR family CARD domain containing 5 nan K22615
gene-evm.TU.Chr15.1208 rna-evm.model.Chr15.1208 Chr15 35322796 35330489 PREDICTED: Putative Polycomb group protein ASXL1 GO:0003677 K11471
gene-evm.TU.Chr15.1209_evm.TU.Chr15.1207 rna-evm.model.Chr15.1209_evm.model.Chr15.1207 Chr15 35276465 35379005 PREDICTED: Kinesin-like protein KIF2A GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10393

For more detailed data, you can explore the Download section to access the full dataset.