CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1187 rna-evm.model.Chr15.1187 Chr15 34474896 34515916 PREDICTED: Plexin-A2 GO:0004672;GO:0004713;GO:0005515;GO:0006468;GO:0017154;GO:0071526 K05099
gene-evm.TU.Chr15.1188_evm.TU.Chr15.1189 rna-evm.model.Chr15.1188_evm.model.Chr15.1189 Chr15 34529853 34675098 PREDICTED: Protein piccolo (Fragment) GO:0005515;GO:0006886;GO:0007416;GO:0016020;GO:0031267;GO:0048786 K16882
gene-evm.TU.Chr15.1189 rna-evm.model.Chr15.1189.1 Chr15 34602905 34645315 PREDICTED: Regulating synaptic membrane exocytosis protein 1 GO:0007416;GO:0048786 K16882
gene-evm.TU.Chr15.119 rna-evm.model.Chr15.119 Chr15 2287067 2288212 PREDICTED: Serine protease 23 GO:0004252;GO:0006508 K09627
gene-evm.TU.Chr15.1192 rna-evm.model.Chr15.1192 Chr15 34888613 34918037 PREDICTED: Metabotropic glutamate receptor 8 GO:0004930;GO:0007186;GO:0016020 K04610
gene-evm.TU.Chr15.1194 rna-evm.model.Chr15.1194 Chr15 34976204 34978491 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676 nan
gene-evm.TU.Chr15.1195 rna-evm.model.Chr15.1195 Chr15 35026848 35045483 PREDICTED: Galaxin nan K08132
gene-evm.TU.Chr15.1196 rna-evm.model.Chr15.1196 Chr15 35049151 35078612 PREDICTED: Muscle M-line assembly protein unc-89 nan K12567
gene-evm.TU.Chr15.1197 rna-evm.model.Chr15.1197 Chr15 35082253 35113366 PREDICTED: OTU domain-containing protein 5 [EC:3.4.19.12] nan K23966
gene-evm.TU.Chr15.1198 rna-evm.model.Chr15.1198 Chr15 35117001 35118996 PREDICTED: 40S ribosomal protein S23 GO:0003735;GO:0005840;GO:0006412 K02973

For more detailed data, you can explore the Download section to access the full dataset.