CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1171 rna-evm.model.Chr15.1171.1 Chr15 34006707 34015258 PREDICTED: Serine/threonine-protein kinase OSR1 GO:0004672;GO:0005524;GO:0006468 K21356
gene-evm.TU.Chr15.1172 rna-evm.model.Chr15.1172 Chr15 34036086 34092270 PREDICTED: Transient receptor potential cation channel subfamily V member 6 GO:0005216;GO:0005515;GO:0006811;GO:0016020;GO:0016020;GO:0055085 K04975
gene-evm.TU.Chr15.1174 rna-evm.model.Chr15.1174 Chr15 34122487 34151766 PREDICTED: Leukotriene A-4 hydrolase GO:0006508;GO:0008237;GO:0008270 K01254
gene-evm.TU.Chr15.1176 rna-evm.model.Chr15.1176 Chr15 34167677 34226173 PREDICTED: Guanine nucleotide-binding protein G(i) subunit alpha GO:0003924;GO:0005525;GO:0007186;GO:0007188;GO:0019001;GO:0031683 K04630
gene-evm.TU.Chr15.1177 rna-evm.model.Chr15.1177 Chr15 34252665 34253090 PREDICTED: Transposable element Tcb1 transposase nan K07494
gene-evm.TU.Chr15.1178 rna-evm.model.Chr15.1178 Chr15 34268668 34271723 PREDICTED: Cartilage intermediate layer protein 2 nan K24436
gene-evm.TU.Chr15.1179 rna-evm.model.Chr15.1179 Chr15 34280174 34281749 PREDICTED: Carboxypeptidase N subunit 2 GO:0005515 K05401
gene-evm.TU.Chr15.1180 rna-evm.model.Chr15.1180 Chr15 34295783 34305929 PREDICTED: Adhesion G-protein coupled receptor G6 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K08455
gene-evm.TU.Chr15.1181 rna-evm.model.Chr15.1181 Chr15 34309315 34344469 uncharacterized protein nan K10064
gene-evm.TU.Chr15.1185 rna-evm.model.Chr15.1185 Chr15 34451657 34460407 PREDICTED: Guanylate cyclase 32E GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12324

For more detailed data, you can explore the Download section to access the full dataset.