CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1156 rna-evm.model.Chr15.1156 Chr15 33456311 33456781 uncharacterized protein nan nan
gene-evm.TU.Chr15.1158 rna-evm.model.Chr15.1158 Chr15 33643394 33644693 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr15.116 rna-evm.model.Chr15.116 Chr15 2251281 2270353 PREDICTED: GATOR complex protein NPRL2 nan K20405
gene-evm.TU.Chr15.1160 rna-evm.model.Chr15.1160 Chr15 33652327 33655520 PREDICTED: Somatostatin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr15.1161 rna-evm.model.Chr15.1161 Chr15 33681814 33682245 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K21406
gene-evm.TU.Chr15.1165 rna-evm.model.Chr15.1165 Chr15 33922066 33924340 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr15.1168 rna-evm.model.Chr15.1168 Chr15 33957896 33958609 uncharacterized protein nan nan
gene-evm.TU.Chr15.1169 rna-evm.model.Chr15.1169 Chr15 33960445 33997576 PREDICTED: Serine/threonine-protein kinase Nek4 GO:0004672;GO:0005524;GO:0006468 K08857
gene-evm.TU.Chr15.117 rna-evm.model.Chr15.117 Chr15 2271885 2274193 PREDICTED: Probable E3 ubiquitin ligase SUD1 GO:0008270 K10657
gene-evm.TU.Chr15.1170 rna-evm.model.Chr15.1170 Chr15 34001771 34002262 PREDICTED: Serine/threonine-protein kinase pakE GO:0004672;GO:0005524;GO:0006468 K08294

For more detailed data, you can explore the Download section to access the full dataset.