CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.2159 rna-evm.model.Chr1.2159 Chr1 68768089 68769079 PREDICTED: Galactoside 2-alpha-L-fucosyltransferase 1 GO:0005975;GO:0008107;GO:0016020 K00718
gene-evm.TU.Chr1.216 rna-evm.model.Chr1.216 Chr1 6704919 6706058 PREDICTED: Patched domain-containing protein 3 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K24682
gene-evm.TU.Chr1.2160 rna-evm.model.Chr1.2160 Chr1 68807914 68824570 PREDICTED: Glutamate receptor 2 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198
gene-evm.TU.Chr1.2165 rna-evm.model.Chr1.2165 Chr1 69365378 69368915 uncharacterized protein nan nan
gene-evm.TU.Chr1.2167 rna-evm.model.Chr1.2167 Chr1 69487224 69508706 PREDICTED: Glutamate receptor 2 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198
gene-evm.TU.Chr1.2168 rna-evm.model.Chr1.2168 Chr1 69548079 69548963 PREDICTED: Galactoside 2-alpha-L-fucosyltransferase 1 GO:0005975;GO:0008107;GO:0016020 K00718
gene-evm.TU.Chr1.217 rna-evm.model.Chr1.217 Chr1 6706120 6708659 PREDICTED: Patched domain-containing protein 3 GO:0016020 K24682
gene-evm.TU.Chr1.2171 rna-evm.model.Chr1.2171 Chr1 69629865 69630698 PREDICTED: Allatostatin-A receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr1.2173 rna-evm.model.Chr1.2173 Chr1 69652858 69662206 PREDICTED: Maltase A3 GO:0003824;GO:0005975 K14210
gene-evm.TU.Chr1.2174 rna-evm.model.Chr1.2174 Chr1 69663622 69671736 PREDICTED: Major facilitator superfamily domain-containing protein 8 GO:0016020;GO:0055085 K12307

For more detailed data, you can explore the Download section to access the full dataset.