CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1141 rna-evm.model.Chr15.1141 Chr15 32960510 32963686 uncharacterized protein nan nan
gene-evm.TU.Chr15.1142 rna-evm.model.Chr15.1142 Chr15 33005688 33007004 PREDICTED: Thyrotropin-releasing hormone receptor GO:0004930;GO:0007186;GO:0016020 K04282
gene-evm.TU.Chr15.1143 rna-evm.model.Chr15.1143 Chr15 33112754 33115673 uncharacterized protein nan K23847
gene-evm.TU.Chr15.1145 rna-evm.model.Chr15.1145 Chr15 33139029 33140418 uncharacterized protein nan nan
gene-evm.TU.Chr15.1148 rna-evm.model.Chr15.1148.1 Chr15 33254730 33278076 PREDICTED: UBX domain-containing protein 7 GO:0005515 K24350
gene-evm.TU.Chr15.1149 rna-evm.model.Chr15.1149 Chr15 33274619 33280819 PREDICTED: Zinc finger MYM-type protein 1 nan K24674
gene-evm.TU.Chr15.115 rna-evm.model.Chr15.115 Chr15 2244189 2247704 uncharacterized protein nan K07466
gene-evm.TU.Chr15.1153 rna-evm.model.Chr15.1153 Chr15 33346839 33351752 uncharacterized protein nan K13681
gene-evm.TU.Chr15.1154 rna-evm.model.Chr15.1154 Chr15 33406408 33407712 PREDICTED: Zinc finger protein 862 GO:0046983 K24644
gene-evm.TU.Chr15.1155 rna-evm.model.Chr15.1155 Chr15 33407752 33411333 PREDICTED: Zinc finger protein 862 nan K24642

For more detailed data, you can explore the Download section to access the full dataset.