CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1130 rna-evm.model.Chr15.1130 Chr15 32575784 32678022 PREDICTED: Calcium-dependent secretion activator 1 GO:0016079;GO:1990504 K19933
gene-evm.TU.Chr15.1131 rna-evm.model.Chr15.1131.3 Chr15 32678255 32717331 PREDICTED: Histone-lysine N-methyltransferase SETD5 GO:0005515 K09189
gene-evm.TU.Chr15.1132 rna-evm.model.Chr15.1132 Chr15 32720294 32731883 PREDICTED: N-fatty-acyl-amino acid synthase/hydrolase PM20D1.2 GO:0016787 K13049
gene-evm.TU.Chr15.1133 rna-evm.model.Chr15.1133.1 Chr15 32735266 32771998 PREDICTED: Coiled-coil domain-containing protein 66 GO:0005813;GO:0008017;GO:0046548 K25397
gene-evm.TU.Chr15.1134 rna-evm.model.Chr15.1134 Chr15 32772905 32795302 PREDICTED: B-cell receptor-associated protein 31 GO:0005783;GO:0006886;GO:0016020 K14009
gene-evm.TU.Chr15.1135 rna-evm.model.Chr15.1135 Chr15 32805379 32832887 PREDICTED: Dynein regulatory complex protein 11 GO:0005524 K24837
gene-evm.TU.Chr15.1136 rna-evm.model.Chr15.1136 Chr15 32840786 32901586 PREDICTED: Regulator of MON1-CCZ1 complex GO:0010506;GO:0035658 K24763
gene-evm.TU.Chr15.1139 rna-evm.model.Chr15.1139 Chr15 32936382 32945470 uncharacterized protein nan K08340
gene-evm.TU.Chr15.114 rna-evm.model.Chr15.114 Chr15 2237834 2238558 uncharacterized protein nan nan
gene-evm.TU.Chr15.1140 rna-evm.model.Chr15.1140 Chr15 32946362 32958797 PREDICTED: complement component 4 nan K14599

For more detailed data, you can explore the Download section to access the full dataset.