CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr15.1115 rna-evm.model.Chr15.1115 Chr15 32370050 32371730 PREDICTED: solute carrier family 15, member 5 GO:0015074 K23454
gene-evm.TU.Chr15.1116 rna-evm.model.Chr15.1116 Chr15 32386729 32398589 PREDICTED: apoptosis-resistant E3 ubiquitin protein ligase 1 [EC:2.3.2.26] GO:0004842;GO:0005515 K10615
gene-evm.TU.Chr15.1117 rna-evm.model.Chr15.1117 Chr15 32400747 32408786 PREDICTED: protein shisa-5-like nan K10135
gene-evm.TU.Chr15.1118 rna-evm.model.Chr15.1118 Chr15 32429048 32452616 uncharacterized protein nan K26099
gene-evm.TU.Chr15.112 rna-evm.model.Chr15.112 Chr15 2208041 2224457 PREDICTED: Pogo transposable element with KRAB domain nan K11496
gene-evm.TU.Chr15.1120 rna-evm.model.Chr15.1120 Chr15 32465970 32468456 PREDICTED: cysteine and tyrosine-rich protein 1-like nan K06449
gene-evm.TU.Chr15.1121 rna-evm.model.Chr15.1121 Chr15 32476337 32481250 uncharacterized protein nan K23414
gene-evm.TU.Chr15.1128 rna-evm.model.Chr15.1128 Chr15 32509898 32548795 PREDICTED: PX domain-containing protein kinase-like protein GO:0004672;GO:0005524;GO:0006468;GO:0035091 K17543
gene-evm.TU.Chr15.1129 rna-evm.model.Chr15.1129 Chr15 32548996 32568416 PREDICTED: Methylglutaconyl-CoA hydratase, mitochondrial GO:0003824 K05607
gene-evm.TU.Chr15.113 rna-evm.model.Chr15.113 Chr15 2225076 2233555 PREDICTED: U3 small nucleolar RNA-associated protein 19 nan K23815

For more detailed data, you can explore the Download section to access the full dataset.